Survival-associated meQTLs across different cancer types


We identified 23,432 meQTLs associated with patient overall survival across different cancer types at FDR < 0.05.


e.g., "BLCA"
e.g., "rs11600543"


Cancer type
SNP ID
SNP position (hg19)
Alleles (A/a)
log-rank test p-value
Sample size
Median survival time AA
Median survival time Aa
Median survival time aa
Dispaly
ESCA rs16893240 chr8:120872479 T/A 4.38E-7 182 12.97 18.6 3.73 KM Plot
ESCA rs16893243 chr8:120873701 C/G 3.68E-7 183 12.97 18.58 3.73 KM Plot
ESCA rs16893249 chr8:120877653 T/G 6.81E-6 184 12.87 18.57 3.6 KM Plot
ESCA rs16893252 chr8:120879600 A/G 1.67E-7 184 3.47 18.5 12.87 KM Plot
ESCA rs169094 chr1:112312154 C/T 5.92E-5 184 13.4 10.15 6.13 KM Plot
ESCA rs16970663 chr17:75922882 G/A 2.12E-5 175 13.02 15.9 4.62 KM Plot
ESCA rs17028575 chr1:112342326 A/G 2.49E-5 184 13.37 12.98 3.2 KM Plot
ESCA rs17037327 chr1:11771988 A/G 7.5E-10 179 13.37 12.63 2.67 KM Plot
ESCA rs17135339 chr16:1499908 T/C 1.34E-7 183 13.33 14.12 4 KM Plot
ESCA rs17215008 chr3:46012279 T/C 0 182 13.35 12.6 0.8 KM Plot
ESCA rs17280623 chr3:46006341 C/G 0 183 13.33 12.6 0.8 KM Plot
ESCA rs17403326 chr7:135194440 T/G 3.6E-5 182 13.03 15.12 4.6 KM Plot
ESCA rs17411356 chr1:3697035 A/G 1.75E-12 183 13.03 16.4 2.27 KM Plot
ESCA rs17411384 chr1:3698224 G/C 1.75E-12 183 13.03 16.4 2.27 KM Plot
ESCA rs17541041 chr11:44596817 C/T 1.47E-6 184 4.27 18.9 13.35 KM Plot